Anti-Inflammatory Diet Plan →

  • About
  • Subscribe
  • Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar
Cotter Crunch

Cotter Crunch

Delicious Healthy Gluten-Free Recipes

  • All Recipes
    • By Diet
      • Dairy-Free
      • Egg-Free
      • Gluten-Free
      • Grain-Free
      • Low-Carb
      • Nightshade-Free
      • Nut-Free
      • Vegan
      • Vegetarian
      • Whole30
    • By Type
      • Breakfast & Brunch
      • Casseroles
      • Condiments
      • Desserts
      • Drinks
      • Main Dishes
      • Sides & Salads
      • Snacks & Appetizers
      • Stews & Soups
    • By Method
      • Air Fryer
      • Blender
      • Instant Pot
      • No-Bake
      • Oven
      • Slow Cooker
      • Stovetop
    • Quick Meals
    • With Video
  • Meal Plans
  • Shop
  • Start Here
    • Gluten-Free Eating
    • Anti-Inflammatory
    • More Diet Guides
      • Autoimmune Protocol
      • Anti-Inflammatory
      • Nightshade-Free
      • Vegan
      • Vegetarian
      • Whole30
  • Cookbooks
  • Search
Home › Recipes › By Type › Baked Goods
10 Comments

Gluten-Free Carrot Cake Muffins

Avatar photo

by Lindsay Cotter Published: Mar 19, 2024

Dairy-FreeEgg-FreeGluten-FreeNightshade-FreeVegan
Jump to Recipe
This post may contain affiliate links (disclosure policy).
A photo of 2 stacked gluten-free carrot cake muffins with a text overlay for pinterest.

These Easy Gluten-Free Carrot Cake Muffins have all the flavor of traditional carrot cake in the convenience of healthy, bite-sized muffins. Sweet, moist, and fluffy, they’re refined sugar-free and packed with carrots, dates, nuts, and shredded coconut. Egg-free option, too. 

Two gluten free carrot cake muffins in muffin liners stacked on top of each other. this for later

  • Carrot Cake Craze
  • Ingredients and Substitutions
    • Optional Glaze
  • Baking Tips
  • How to Make Carrot Cake Muffins
  • How to Store Muffins
  • Gluten-Free Muffin Recipes

Personal Note: As I write this, I have a freezer full of gluten-free muffins including both the vegan and regular versions of this recipe. I always like to keep a variety of allergy-friendly snacks on hand to treat guests when they come to my home or work studio, regardless of their dietary needs. The best part is that no one can tell that these muffins are made without added sugar, just real food ingredients! 

Carrot Cake Craze

Are you a fan of carrot cake? Honestly, it’s been a longtime favorite dessert recipe of mine and was the inspiration for my infamous Blueberry Carrot Cake Bars. How can you resist the combination of warm spices, soft cake texture, and sweet cream cheese frosting.

While we might not be able to eat carrot cake every day, we can give it a nutritious makeover! These gluten free carrot cake muffins are packed with nutrients and veggies yet taste just like your favorite cake. Even better, they’re portable, easy to make ahead of time, and great to pack in lunches or grab as a breakfast or snack as you head out the door! 

Up close photo of a gluten free carrot cake muffin with a bite taken out.

Ingredients and Substitutions

Below is an overview of the ingredients and instructions to make this healthy carrot cake muffins recipe. Be sure to scroll down to the recipe card below for the complete details! 

Overhead photo of carrot cake muffin ingredients like oatmeal, shredded carrots and maple syrup.
  • Gluten-Free Rolled Oats – Feel free to use whole oats or pre-made oat flour. Look for certified gluten-free varieties to avoid the risk of cross-contamination. 

Ingredient Swap: Gluten-free all-purpose flour may be substituted for tapioca starch. Just note that the texture may vary. 

  • Tapioca Starch – Helps thicken the mixture. 
  • Baking Powder and Baking Soda – These allow the muffins to rise and become fluffy. 
  • Ground Cinnamon – Adds warm notes and enhances the sweet flavor of the muffins. 
  • Non-Dairy Milk – Adding non-dairy milk to your muffins combines the ingredients and boosts the calcium content. 
  • Refined Coconut Oil – Look for a naturally refined coconut oil to avoid coconut flavor. Oil is crucial to keep your muffins moist! Plus, Coconut oil is also a good source of antioxidants and medium-chain triglycerides. Meanwhile, avocado oil is rich in omega fatty acids, both of which can contribute to your overall well-being. 
  • Natural Sweetener – Use honey or maple syrup to sweeten the muffins. 
  • Apple Cider Vinegar – Feel free to substitute lemon juice if preferred. 
  • Egg or Egg Substitute – This acts as a binder, holding all the muffins together. See the notes below for egg substitute options. 
  • Mix-Ins – Shredded carrots, chopped pitted dates or raisins, shredded coconut, and optional chopped nuts such as pecans or almonds make these muffins taste like you’re eating a slice of carrot cake. 

Egg Substitutions

  • Flax Egg Option: Combine two tablespoons of flax meal with five tablespoons of water. Whisk until smooth, and set the mixture aside for ten minutes to thicken. 
  • Gelatin Egg Option: Add ¼ cup of water to a small saucepan over medium-low heat. Once the water is warm, slowly sprinkle in one tablespoon of grass-fed beef gelatin, whisking continuously to remove clumps. Once the mixture is smooth, remove it from the heat, and set it aside to thicken. 

Optional Glaze

  • Refined Coconut Oil – This helps create a smooth consistency and a rich taste. Feel free to substitute melted butter or vegan butter if preferred. 
  • Maple Syrup – Sweetens the glaze while maintaining its sticky consistency. 
  • Confectioners Sugar – Sweetens the glaze further. Feel free to use a powdered sugar alternative to keep the sugar content lower.

Baking Tips

  • Use Finely Shredded Carrots. For the best results, make sure your carrots are shredded finely to prevent a gritty texture. To do so, use a vegetable peeler, a box grater, or a food processor! 
  • Don’t Overmix the Batter. Over-mixing the batter will result in a dense texture instead of light and fluffy muffins. Make sure to stir the ingredients until they are just combined and smooth!
    Use Fresh Baking Soda. The fresher the baking soda, the fluffier your healthy carrot cake muffins will be! For the best muffins, I recommend using a baking soda you’ve had no longer than three months.

How to Make Carrot Cake Muffins

Before you begin, preheat your oven, and line a muffin tin with paper liners. 

Note: If making egg-free muffins, prepare the flax or gelatin egg before you begin. 

  1. Combine the dry ingredients. Add the oats, tapioca starch, baking powder, baking soda, salt, cinnamon, and nutmeg to a blender. Pulse until a fine flour is formed. Then, transfer the mixture to a large bowl. 
  2. Whisk the wet ingredients. Add the milk, oil, maple syrup, vinegar, and egg to a separate large mixing bowl. Whisk until smooth, and set the mixture aside. 

Note: If using an egg substitute, add it to the wet ingredients after combining them with the dry ingredients. 

Overhead photo of almond flour and spices in a blender.
Overhead photo of gelatin, shredded carrots, and dates on top of carrot cake muffin batter.
  1. Combine. Working slowly, add the bowl of wet ingredients to the bowl of dry ingredients. Mix until smooth. Then, fold in the carrots, dates, coconut, and optional nuts. 
  2. Portion. Use a cookie dough scoop or ice cream scoop to spoon the muffin batter into the muffin pan. Fill each cup ⅔ to ¾ of the way full. 
  3. Bake. Transfer the muffins to the preheated oven. Bake until they’re fluffy and a toothpick inserted into the center comes out clean. 
  4. Cool. Allow the muffins to cool slightly in the pan. Then, transfer them to a wire rack to cool completely. 

Note: If using an egg replacer, it’s best to place the cooled muffins in the fridge to cool to help the center set. 

Unbaked healthy carrot cake muffin batter in a muffin pan ready for the oven.
Eight baked gluten free carrot cake muffins in a metal muffin pan.
  1. Prepare the glaze. Combine the glaze ingredients in a small sauce pot, and mix. Heat the ingredients over medium-low until well combined. Alternatively, you can heat the glaze in 15-second increments in the microwave. 
  2. Serve. Drizzle the glaze over the carrot cake muffins, allow it to set, and enjoy! These gluten-free muffins are nutritious, but with the added glaze they taste more like gluten-free carrot cake cupcakes! 
Up close photo of a gluten free carrot cake muffin topped with a sweet glaze.

How to Store Muffins

To Store: For the best taste and texture, loosely cover the muffins overnight on the counter or in the fridge. The liners will peel easily, and the muffins will be sweeter. For a longer-lasting option, pop the muffins in the fridge for up to four to five days.

To Freeze: Allow the muffins to cool completely, and transfer them to an airtight container. Store the muffins in the freezer for up to three months. When ready to serve, thaw the muffins in the fridge overnight. Then, enjoy them cold. Or, warm them in the microwave for 30 seconds to one minute. 

Pro-Tip: To prevent soggy muffins, I recommend freezing them without the glaze. 

Close up photo of a gluten free carrot cake muffin popping out of the pan.

More of Our Favorite

Gluten-Free Muffin Recipes

  • Gluten-Free Coffee Cake Muffins
  • Gluten-Free Coconut Orange Muffins
  • Gluten-Free Blueberry Muffins
  • Gluten-Free Apple Oatmeal Muffins
Print
clock clock iconcutlery cutlery iconflag flag iconfolder folder iconinstagram instagram iconpinterest pinterest iconfacebook facebook iconprint print iconsquares squares iconheart heart iconheart solid heart solid icon
Two gluten free carrot cake muffins in muffin liners stacked on top of each other.

Gluten-Free Carrot Cake Muffins Recipe


5 Stars 4 Stars 3 Stars 2 Stars 1 Star

5 from 4 reviews

  • Author: Lindsay Cotter
  • Total Time: 33 to 37 minutes
  • Yield: 10 muffins 1x
  • Diet: Gluten Free
Print Recipe
Pin Recipe

Description

Enjoy all the flavor of your favorite dessert with the benefits of nutritious ingredients thanks to this easy gluten-free carrot cake muffins recipe! Egg-free option.


Ingredients

Units Scale
  • 2 cups (150 grams) gluten-free rolled oats or 1 ⅓ to 1 ½ cups (150 grams) gluten-free oat flour (see notes)
  • 2 Tablespoons (16–17 grams) tapioca starch or 2 Tablespoons gluten-free flour arrowroot starch
  • 2 teaspoons baking powder
  • 1 teaspoon baking soda
  • ¼ teaspoon kosher salt
  • 2 teaspoons ground cinnamon
  • ⅓ cup non-dairy milk
  • ¼ cup refined melted coconut oil or avocado oil
  • ⅓ cup honey or maple syrup
  • 1 teaspoon apple cider vinegar or lemon juice
  • 1 large egg (whisked) or egg substitute (see notes for egg-free substitutes)

Mix Ins

  • 1 cup shredded carrots
  • ⅓ cup chopped pitted dates or raisins
  • ⅓ cup unsweetened shredded coconut
  • Optional – 3 Tablespoons nuts, chopped

Optional Glaze 

  • ¼ cup refined coconut oil or melted butter
  • ¼ cup maple syrup
  • 3 – 4 Tablespoons confectioner sugar or powdered sugar alternative

Instructions

  1. Preheat the oven to 350°F. Line a muffin pan with 10 liners.
  2. If making the egg-free version, prepare the 2 flax eggs or gelatin egg (see blog post).
  3. In a blender, pulse the rolled oats, tapioca starch, baking powder, baking soda, salt, and cinnamon and nutmeg until a fine flour is formed. Transfer to a large bowl (see notes for an alternative method).
  4. In a bowl, whisk together the milk, oil, maple syrup, vinegar and egg. Set aside. (NOTE – For egg free option, stir in the flax egg after combining the wet/dry ingredients).
  5. Add the wet ingredients to the bowl of dry ingredients. Mix together until smooth.
  6. Fold in the carrots, dates, coconut, and optional nuts.
  7. Spoon the muffin batter into the muffin pan using a cookie dough or ice cream scoop. Fill each liner ⅔ -¾ full.
  8. Bake for 18 to 22 minutes or until a toothpick inserted in the center comes out clean. Check for doneness after 18 minutes if using a real egg.
  9. Let the muffins fully cool on a wire rack before serving. If using an egg replacer, it’s best to place cooled muffins in the fridge for 5-10 minutes to help the center set.
  10. Glaze: Combine the glaze ingredients into a small sauce pot, and mix together. Heat over medium-low heat until combined. Alternatively, combine the ingredients in a microwave safe bowl, and mix together. Microwave for 15 seconds or until melted. Stir to combine. Drizzle over muffins before serving.

Notes

Substitutes Tips – Replace the rolled oats with 150 grams of gluten free oat flour (about 1 ⅓ cup). No blender or food processor is needed. Whisk the oat flour together with the rest of the dry ingredients. A flax egg may be substituted for the egg for an egg-free recipe. Gluten free all purpose flour may be substituted for the tapioca starch.

Storage Tip – For better taste and texture, loosely cover the muffins overnight on the counter or in the fridge. The liners will peel easily, and the muffins will be softer and sweeter.

  • Prep Time: 15 minutes
  • Cook Time: 18 to 22 minutes
  • Category: breakfast
  • Method: oven
  • Cuisine: American

Nutrition

  • Serving Size: 1 muffin (using egg)
  • Calories: 171
  • Sugar: 7.5 g
  • Sodium: 207.1 mg
  • Fat: 7.5 g
  • Saturated Fat: 5 g
  • Carbohydrates: 20.9 g
  • Fiber: 2.2 g
  • Protein: 3 g
  • Cholesterol: 18.6 mg

We have a new cookbook!

Allergy Friendly Recipes for Everyone Around The Table! Order here

173 shares
  • Share
  • Tweet

Categories: Baked Goods, Blender, Breakfast & Brunch, Dairy-Free, Egg-Free, Gluten-Free, Nightshade-Free, Oven, Vegan Tags: breakfast, carrot cake, carrot cake muffins, carrot cake muffins recipe, dairy free, egg free, gluten free, gluten free muffins, healthy carrot cake muffins, kid friendly, muffin, snack, vegan friendly

A photo of 2 stacked gluten-free carrot cake muffins with a text overlay for pinterest.
overhead image of a savory quinoa breakfast bowl with quinoa, chickpeas, sweet potatoes, spinach, tomatoes, avocado, and a fried egg

Free 5 Day Anti-Inflammatory Email Guide

Enter your email below and we’ll send it straight to your inbox.

More recipes you’ll love!

Two woman's hands holding a loaf of gluten free pumpkin bread in a metal pan.
Vegan Chocolate Chip Pumpkin Bread
a stack of three chocolate chip gluten free zucchini muffins on top of each other
Gluten-Free Zucchini Muffins
Close up stack of vegan chocolate breakfast cookies with melted chocolate and crushed hazelnuts.
Chocolate Vegan Protein Cookies
one fluffy gluten free chocolate muffin topped with sea salt on white paper cupcake liner
Vegan Dark Chocolate Muffin
A photo of 2 stacked gluten-free carrot cake muffins with a text overlay for pinterest.
Lindsay Cotter of Cotter Crunch

About Lindsay

Hi, y’all, I’m Lindsay Cotter, a Nutrition Specialist with a focus on Gluten-Free eating. I love creating delicious nourishing food that anyone can enjoy.

  • About
  • Studio
  • Shop
  • Subscribe
  • Instagram
  • Pinterest
  • Facebook
  • Twitter
  • YouTube
A photo of 2 stacked gluten-free carrot cake muffins with a text overlay for pinterest.
21 day anti-inflammatory diet guide

Feel your best—heal with food!

Struggling with inflammation, fatigue, or digestive issues? This 21-day plan gives you a step-by-step guide to help you feel better fast!

Get Started Today!

Have a question? Use ctrl+f or ⌘+f on your computer or the “find on page” function on your phone browser to search existing comments!

Reader Interactions

Comments

    Rate & Comment Cancel reply

    Your email address will not be published. Required fields are marked *

    Recipe rating 5 Stars 4 Stars 3 Stars 2 Stars 1 Star

  1. Avatar photoTania

    May 19, 2023 at 4:04 AM

    can I use regular canola oil.Thanks.

    Reply
    • Avatar photoLindsay Cotter

      May 19, 2023 at 1:53 PM

      You mean in place of the avocado/olive oil?

      Reply
      • Avatar photoTania

        May 20, 2023 at 11:15 AM

        Thanks for getting back to me! I did end up using canola oil in place of the avocado/olive oil. They turned out delicious! Thank you so much for sharing the recipe! Will definitely be making them again. 🙂

        Reply
        • Avatar photoLindsay Cotter

          May 20, 2023 at 4:17 PM

          wonderful! So glad it worked out!

          Reply
  2. Avatar photocathy

    Mar 03, 2022 at 8:31 AM

    Love that this was egg free. They turned out amazing.

    Reply
    • Avatar photoLindsay Cotter

      Mar 03, 2022 at 12:20 PM

      So glad! Thanks for feedback Cathy!

      Reply
  3. Avatar photoToni

    Mar 03, 2022 at 2:44 AM

    Thank you so much for the egg-free option! This is such an amazing muffin recipe!

    Reply
  4. Avatar photoSarah Y

    Mar 02, 2022 at 12:05 PM

    I loved these but my kids ate them all! I have to make more!

    Reply
  5. Avatar photoAna

    Mar 02, 2022 at 10:53 AM

    The perfect breakfast muffin! Love the fresh veggies added such a great health boost using a collagen egg! Delicious!

    Reply
    • Avatar photoLindsay Cotter

      Mar 02, 2022 at 2:01 PM

      So glad! gotta love those health perks. 😉

      Reply

Primary Sidebar

A photo of 2 stacked gluten-free carrot cake muffins with a text overlay for pinterest.
Lindsay Cotter of Cotter Crunch

About Lindsay

Hi, y’all, I’m Lindsay Cotter, a Nutrition Specialist with a focus on Gluten-Free eating. I love creating delicious nourishing food that anyone can enjoy.

  • About
  • Studio
  • Shop
  • Subscribe
  • Instagram
  • Pinterest
  • Facebook
  • Twitter
  • YouTube
A photo of 2 stacked gluten-free carrot cake muffins with a text overlay for pinterest.

Trending Now

  • A photo collage of 6 photos of anti-inflammatory foods with a text overlay.Anti-Inflammatory Diet Meal Plan
  • overhead photo: large pot of peanut stew; wooden spoon stirring fresh herbs inAfrican Peanut Stew
  • keto meal prep casserole made with chicken and veggiesItalian Chicken Casserole Meal Prep
  • Overhead photo of cooked Mediterranean pork medallions with potatoes and tomatoes.Mediterranean Pork Tenderloin Medallions
  • Overhead photo of a woman's hand picking up a slice of cheese pizza.No-Yeast Gluten-Free Pizza Crust
  • Two cocktail glasses filled with citrus paloma cocktail, orange slices floating in drinksEasy Paloma Cocktail with Orange

Recipes by Diet

  • Dairy-Free
  • Egg-Free
  • Gluten-Free
  • Grain-Free
  • Low-Carb
  • Nightshade-Free
  • Nut-Free
  • Vegan
  • Vegetarian
  • Whole30

Recipes by Method

  • Air Fryer
  • Blender
  • Instant Pot
  • No-Bake
  • Oven
  • Slow Cooker
  • Stovetop

Recipes by Type

  • Breakfast & Brunch
  • Casseroles
  • Condiments
  • Desserts
  • Drinks
  • Main Dishes
  • Sides & Salads
  • Snacks & Apps
  • Stews & Soups

Resources & More

  • Meal Plans
  • Nutrition Guides
  • How-To
  • Quick Meals
  • Videos
  • Round Ups
  • GF Start Here
  • Anti-Inflammatory
A photo of 2 stacked gluten-free carrot cake muffins with a text overlay for pinterest.
  • Instagram
  • Pinterest
  • Facebook
  • Twitter
  • YouTube
Cotter Crunch
  • About
  • Studio
  • Shop
  • Subscribe

© 2026 · Cotter Crunch · Disclaimer & Terms · Privacy Policy · Contact

A photo of 2 stacked gluten-free carrot cake muffins with a text overlay for pinterest.
173 shares