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23 Comments

Gluten-Free Apple Oatmeal Muffins

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by Lindsay Cotter Updated: Sep 28, 2023

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Made with gluten-free rolled oats, crisp apples, and warm spices, these Apple Oatmeal Muffins are gluten-free, refined sugar-free, and kid-friendly. Make them ahead of time for allergy-friendly breakfasts, lunchbox snacks, and more! Vegan option. 

3 gluten free apple oatmeal muffins stacked on top of each other this for later

  • An Apple Muffin a Day Keeps the Doctor Away
  • Ingredients for Apple Oatmeal Muffins
  • How to Make Apple Oat Muffins
  • Add-Ins
  • Storage Tips
  • Can I Freeze Flourless Muffins?
  • Gluten-Free Muffins

An Apple Muffin a Day Keeps the Doctor Away

Did you know that the average American citizen eats about 20 pounds of apples each year? Yep, you read that right! With recipes like Apple Cider Caramel Baked Apples, Almond Flour Apple Coffee Cake, and Creamy Apple Salad Wraps, I can see why. They’re just so dang delicious!

overhead shot of gluten free applesauce muffins on a cooling rack

Ingredients for Apple Oatmeal Muffins

Below is an overview of the ingredients and instructions for apple oatmeal muffins. Please be sure to scroll down to the recipe card below for the complete details! 

ingredients for gluten free oatmeal applesauce muffins on a counter

Gluten Free Rolled Oats – If you have it on hand, you can skip using rolled oats, and replace them with oat flour instead. You’ll probably want to keep some gluten free rolled oats on hand for the crumble topping, though! 

Pro-Tip: Depending on the cut, different types of oat flour can weigh more or less. For accuracy, make sure the oat flour weighs the same as the grams listed in the recipe. Also, make sure you’re using certified gluten free oat flour, like Bob’s Redmill! 

Flax Meal – I like flax meal for the slightly nutty flavor it adds, but if you don’t have them available, you can replace them with chia seeds. Just make sure to grind them first!

Applesauce – Make sure you use unsweetened applesauce! Otherwise, your muffins might be too sweet for your liking. 

Non-Dairy Milk – Any non-dairy you like best works well for this recipe as long as it is not flavored. 

Tip for Vegan Baking: Wanna know the secret to making these oat muffins vegan without sacrificing taste or texture? It’s all in how you combine a few special ingredients! Flax meal, applesauce, non-dairy milk, and apple cider vinegar come together to create a moist texture and plenty of fluff without the need for eggs or gluten! Not to mention, they add lots of nutrients and fiber!

Maple Syrup – For the richest flavor, I highly recommend using real maple syrup if you’ve got it. However, honey can be used as well. Just make sure it’s the same viscosity as the maple syrup. Not too thick! 

Apple Cider Vinegar – The secret ingredient in these apple muffins, apple cider vinegar helps them rise to create that light, fluffy texture we all love, but lemon juice works, too! 

Apples – Technically, apples are optional, but they are highly recommended! For the sweetest flavor, use red apples such as Jonagold, Honeycrisp, or Pink Lady. 

Nutrition Tip: Did you know a medium-sized apple provides 17% of the daily recommended amount of fiber? Not to mention, it’s full of vitamins and minerals such as vitamin C and potassium!  

How to Make Apple Oat Muffins

Unlike other muffin recipes that can be super elaborate and use every dish in the kitchen, these muffins are quick and easy! All you’ll need is a couple of bowls and a muffin tin, and you’ll be filling your home with warm apple cinnamon scents. 

Mix. In a large bowl, mix together all of the dry ingredients. Or, just toss them in a blender and give them a few pulses to combine. If you used whole oats, you’ll have the blender out to make oat flour, anyway! 

Note: Oat flour (if grounding your own oats) tends to clump together. So, be extra careful to remove any flour clumps when stirring. 

dry ingredients for oatmeal applesauce muffins in a clear bowl being mixed by two hands and a wooden spoon
wet ingredients in a clear mixing bowl for gluten free oatmeal applesauce muffins

Whisk. In a separate smaller bowl, whisk together all of the wet ingredients until they are evenly combined. 

Combine. Gently add the wet batter to the dry batter, and stir in the apple cider vinegar. 

Pro-Tip: Don’t overmix your batter, or the muffins won’t rise! Think of it like a pancake mix, and stir the ingredients until they are just combined and all the clumps are removed. 

Spoon. Add the batter to lined muffins pans, filling them about ⅔ of the way full. 

Note: For added texture and flavor, gently fold chopped apples (peeled or with skin) into the batter before adding them to the muffin tins. 

applesauce muffins in a muffin tin with an apple and oat toppings
muffin tin with gluten free applesauce muffins being held with 2 hands

Top. Combine rolled oats, chopped apples, and coconut sugar in a small bowl, and sprinkle the mixture on top of the muffins. 

Bake. Place the muffin tins in the oven for 18-22 minutes or until a toothpick can be inserted and comes out clean. Once they have finished baking, be sure to let the muffins cool on a cooling rack for 5-10 minutes before eating. Otherwise, they might fall apart! 

Add-Ins

This recipe has tons of great texture and flavor on its own, especially if you add the chopped apples to the center. However, we all like options, right? So, if you want to switch things up try including chopped nuts, dark chocolate chips, or even unsweetened coconut shreds.

Applesuace muffin with a bite taken out

Storage Tips

To keep your muffins super soft and moist, store them in an airtight container in the fridge, but first, place a layer of paper towels in the bottom of the container. Then, add the muffins in a single layer, and top them with another paper towel. This will help keep the moisture in, and your apple oatmeal muffins will stay fresh for up to 4 days. 

Can I Freeze Flourless Muffins?

Yes! In fact, I recommend doing so for quick breakfasts and easy snacks. Just place your muffins in a sealable bag, and store them in the freezer for up to 3 months. To reheat frozen muffins, place them in the fridge to thaw. Then, pop them in the oven at 350 degrees for a few minutes or until they are heated through.

More of Our Favorite

Gluten-Free Muffins

  • Orange Coconut Oatmeal Muffins
  • Spiced Pear Muffins with Nut Topping (Paleo Option)
  • Toasted Coconut Paleo Banana Bread Muffins
  • Flourless Honey Oat Ricotta Muffins
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gluten free applesauce muffin with oat topping

Flourless Apple Oatmeal Muffins (Vegan)


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5 from 9 reviews

  • Author: Lindsay Cotter
  • Total Time: 28-32 minutes
  • Yield: 9–11 muffins 1x
  • Diet: Gluten Free
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Description

These kid-friendly Gluten Free Apple Oatmeal Muffins are made with rolled oats and natural sugars for a healthy breakfast or quick snack that can be prepared ahead of time! Vegan friendly. 


Ingredients

Units Scale
  • 2 cups (160 grams)* gluten free rolled oats plus extra for topping. Gluten free oat flour may be substituted. (Equals about 1 ½ cups oat flour)
  • 2 Tablespoon flax meal
  • ¼ teaspoon of salt
  • 1 ½ teaspoon baking powder
  • 1 ½ teaspoon baking soda
  • 2 teaspoon ground cinnamon
  • ¼ teaspoon ground ginger
  • ¼ teaspoon ground nutmeg
  • ¾ cup unsweetened applesauce
  • ⅔ cup non dairy milk
  • ⅓ cup maple syrup
  • 2 teaspoon apple cider vinegar or lemon juice
  • Optional – ½ cup diced or shredded apple (peeled) to fold into batter + extra for topping
  • Topping – ⅓ diced apple, ¼ c rolled oats, coconut sugar substitute such as brown sugar swerve

Instructions

  1. Preheat oven to 350. Line or grease a muffin tin; set aside.
  2. In a large bowl, mix dry ingredients together, making sure to remove any flour clumps. (Alternatively, place these ingredients in a blender and blend until combined. If using rolled oats, versus oat flour, use a blender to grind the oats into a fine flour first.)
  3. Whisk the applesauce, milk, and maple syrup together in a medium bowl until combined.
  4. Combine wet batter(s) to the dry batter. Then, gently stir in the apple cider vinegar.
  5. Fold in ½ cup of chopped apple into the batter (optional)
  6. Spoon the batter into lined muffin pans, filling each cup ⅔ of the way full.
  7. Topping – Place 3 Tablespoons of rolled oats and ¼ to ⅓ cup chopped apple together in a bowl. Mix the oats and apples with 2 Tablespoons of coconut sugar or brown sugar substitute. Top the muffins with extra rolled oats and/or apple.
  8. Place the muffin tin in the oven for 18-22 minutes or until the center comes out clean with a toothpick.
  9. Remove and place the muffins on a cooling rack for 5 -10 minutes.

Notes

If you loosely cover muffins overnight on the counter or refrigerated, the liners peel off easily the next day, and the flavor and texture are even better.

Flourless Baking Tip – Weigh the oat flour after grinding oats to ensure it’s equivalent to 160 grams. Weight of rolled oats can vary depending on the cut of oats and brand. 

  • Prep Time: 10 minutes
  • Cook Time: 18-22 minutes
  • Category: Breakfast
  • Method: Baking
  • Cuisine: American

Nutrition

  • Serving Size: 1 muffin
  • Calories: 172
  • Sugar: 8.7 g
  • Sodium: 136.6 mg
  • Fat: 0.3 g
  • Saturated Fat: 0.4 g
  • Carbohydrates: 32.8 g
  • Fiber: 4.2 g
  • Protein: 4.5 g
  • Cholesterol: 0 mg

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Categories: Baked Goods, Breakfast & Brunch, Dairy-Free, Egg-Free, Gluten-Free, Nut-Free, Oven, Snacks & Appetizers, Vegan, Vegetarian Tags: breakfast, breakfast to go, gluten free breakfasts, gluten free muffins, gluten free snacks, gluten-free, healthy breakfast, kid, muffins, snacks

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Lindsay Cotter of Cotter Crunch

About Lindsay

Hi, y’all, I’m Lindsay Cotter, a Nutrition Specialist with a focus on Gluten-Free eating. I love creating delicious nourishing food that anyone can enjoy.

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  1. Avatar photoJennifer Lutomski

    Dec 07, 2023 at 12:30 AM

    Perfect texture and flavorful with the warm undertones from the ginger and nutmeg. This recipe will definitely enter my breakfast rotation. I used 1.5 cups oat flour as the suggested and shredded Granny Smith because they are my favorite. The only adaptation was a teaspoon vanilla. Also, I actually skipped the topping because I didn’t think it was necessary. Delicious, will definitely make again.

    Reply
    • Avatar photoLindsay Cotter

      Dec 07, 2023 at 11:48 AM

      Oh wonderful! Love the small changes! Thanks for feedback jen!

      Reply
  2. Avatar photoMary

    Jul 27, 2023 at 4:42 PM

    I made this and added a egg white to recipe. Followed recipe and also added blueberries! Not happy with results! WY too moist! Almost falling apart! What did I do wrong?

    Reply
    • Avatar photoSammi (Cotter Crunch Test Kitchen)

      Jul 28, 2023 at 3:50 PM

      Hi Mary, so sorry the muffins did not turn out as expected. These muffins tend to be fairly moist already so adding an additional egg white and blueberries was probably the culprit. Did you add the other ingredients as listed? Happy to help get this recipe right for you!

      Reply
  3. Avatar photoJohanna

    Feb 12, 2023 at 10:35 PM

    Made them with egg instead of the flax and apple sauce, and greek yogurt instead of the maple to make it more like a simple bread.
    I was searching for a simple gf bread swap so this is just perfect! Loved how it turned out thanks a lot!

    Reply
    • Avatar photoSammi (Cotter Crunch Test Kitchen)

      Feb 13, 2023 at 2:54 PM

      We love the swaps you made, Johanna! So glad you enjoyed this recipe. 🙂

      Reply
  4. Avatar photosusan

    Feb 06, 2023 at 5:16 PM

    I am making these according to the recipe except I left out the flax and I added 1/4 tsp clove and 1/2 cup of raisins. I’ll let you know how they turn out.

    Reply
    • Avatar photosusan

      Feb 06, 2023 at 5:16 PM

      after the adjustments that I listed above plus adding a pinch of salt and using raw sugar in the topping, the muffins were outstanding!

      Reply
      • Avatar photoSammi (Cotter Crunch Test Kitchen)

        Feb 13, 2023 at 2:56 PM

        Yay! That’s wonderful to hear, Susan. We are definitely adding raisins to our batter next time too. Great idea! 🙂

        Reply
  5. Avatar photoRachel

    Jan 11, 2023 at 9:12 PM

    I just thought I should let you know that I make these muffins all the time and everyone I know loves them! It’s amazing how good they are for being “healthy muffins!” I do leave out the apples because…well that’s one too many steps for me haha! Thanks for this awesome recipe!

    Reply
    • Avatar photoSammi (Cotter Crunch Test Kitchen)

      Jan 12, 2023 at 1:53 PM

      Woohoo! I am a fan of these muffins too, Rachel. I’ve always added the diced apples…now I need to try this recipe without them. 🙂 Thanks for sharing your recipe experience with us! Happy baking!

      Reply
  6. Avatar photoAH

    Sep 19, 2022 at 5:25 PM

    Moist, fluffy and delicious. Easy to make. What else could we ask for?

    Reply
    • Avatar photoLindsay Cotter

      Sep 20, 2022 at 9:48 PM

      Maybe a cup of coffee to go with it 😉

      Reply
  7. Avatar photoMary Barber

    Oct 30, 2021 at 6:35 PM

    How much egg would you use in place of flax egg? I can have egg but not flax. 🤷‍♀️ thanks!

    Reply
    • Avatar photoLindsay Cotter

      Nov 02, 2021 at 3:04 PM

      Try this! replace flaxseed with 2 tbsp rolled oats.
      Replace applesauce with 1 large egg.
      Be sure to let batter sit for 10 minutes so oats can absorb liquid, like flaxseed does.
      If batter seems too thick, add 1-2 tbsp more milk. These baked faster than the ones without egg. Closer to 18 minutes. Hope that helps!!

      Reply
  8. Avatar photoWilhelmina

    Sep 13, 2021 at 2:40 PM

    This is a fabulous recipe! I baked a batch for a neighbor who had been ill and they were a huge hit! She swears they were the best muffins ever!

    Reply
    • Avatar photoLindsay Cotter

      Sep 15, 2021 at 12:22 PM

      Wonderful! So glad you were able to share them

      Reply
  9. Avatar photocathy

    Sep 13, 2021 at 7:02 AM

    These were so tasty. The whole family loved them and they were gone almost immediately!

    Reply
    • Avatar photoLindsay Cotter

      Sep 13, 2021 at 12:49 PM

      Awesome! So glad! Thanks Cathy!

      Reply
  10. Avatar photoToni

    Sep 11, 2021 at 7:33 AM

    This is such an amazing breakfast! My kids enjoyed these muffins!

    Reply
    • Avatar photoLindsay Cotter

      Sep 11, 2021 at 5:18 PM

      Yay! Thanks Toni! Hope the kids enjoy.

      Reply
  11. Avatar photoHeather Rose

    Sep 10, 2021 at 11:06 AM

    My kids loved these! I made them last night for them to have for breakfast and they were a big hit.

    Reply
    • Avatar photoLindsay Cotter

      Sep 11, 2021 at 5:17 PM

      So glad! Thanks for feedback Heather.

      Reply

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About Lindsay

Hi, y’all, I’m Lindsay Cotter, a Nutrition Specialist with a focus on Gluten-Free eating. I love creating delicious nourishing food that anyone can enjoy.

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